PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g18040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 359aa    MW: 40654.1 Da    PI: 8.6934
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g18040genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.31.3e-381112604133
         TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssa...seceaessss 80 
                  kdrhski T++g+RdRR+Rls+e a++fF Lqd LGfdk+skt+eWLl+++  ai el+ t                       +   sece  s   
  CA06g18040 111 SKDRHSKINTARGPRDRRMRLSLEAARKFFSLQDLLGFDKASKTVEWLLNKSDSAIEELAATnkqnsctttttttgigaicA---SnslSECEVISGTD 206
                 79************************************************************88887777766666655432...03346774444443 PP

         TCP  81 sasnsssg.kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                 ++s++ ++ +  k ++k+kk+++++a    l +esr +arararert+ k++ +
  CA06g18040 207 ETSSNDKNkETVKGEKKKKKKKTNPARIEPLTRESRDRARARARERTKIKKMSQ 260
                 33333333244455558899999999999****************999776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-42110259IPR005333Transcription factor, TCP
PROSITE profilePS5136933.738111169IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.497239256IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MYSPSSNNCN YSPILSSINS FHIPSPSMQY ENELFFQSYH HDHIYFQQQQ QQQQEVPLME  60
DLSLHILADS TKTVLEGIVE EGGEGKGDDT MSSRNSIISG RISKNNKRSS SKDRHSKINT  120
ARGPRDRRMR LSLEAARKFF SLQDLLGFDK ASKTVEWLLN KSDSAIEELA ATNKQNSCTT  180
TTTTTGIGAI CASNSLSECE VISGTDETSS NDKNKETVKG EKKKKKKKTN PARIEPLTRE  240
SRDRARARAR ERTKIKKMSQ IDKSKAPAND LNPSGSNWKP INKTREEHVT HEQLMTFHQE  300
KQQLIGTNKE NNIVDENNLV FNGNWNPFSI FNYHDQNAGI SNEHQFTDFQ FCGKLWEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227KKKKKKK
2241253RDRARARARERTK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5972281e-79HM597228.1 Solanum tuberosum BRANCHED1B (BRC1B) mRNA, complete cds.
GenBankHM9210511e-79HM921051.1 Solanum tuberosum BRANCHED1B (BRANCHED1B) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555857.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLF6KB991e-151F6KB99_SOLLC; BRANCHED1B
STRINGSolyc06g069240.1.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-20TCP domain protein 12